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دکتر موسی شمسی
مرتبه علمی :استاد
تخصص :
دکتری مهندسی پزشکی-بیوالکتریک
زمینه های تحقیقاتی :
تصویرگری پزشکی، پردازش تصاویر و سیگنال های پزشکی، آنالیز مبتنی بر تصویر جراحی های چهره، Genomic Signal Processing
مراکز تحقیقاتی :
پست الکترونیکی:
shamsi@sut.ac.ir
شماره تلفن:
04133458416
شماره فکس:
04133444360
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رزومه:
Mousa Shamsi,
Professor of Bioelectrical Engineering
Faculty of Biomedical Engineering, Sahand University of Technology,
Sahand New Town, Tabriz, Iran
P.O.Box: 51335-1996
Tel: 041-33458416
Fax: 041-33444360
Email(s):
shamsi@sut.ac.ir
mousa_shamsi@yahoo.com
mousashamsi@gmail.com
[BIOGRAPHY| EDUCATIONAL BACKGROUND| OUTSTANDING ACHIEVEMENTS| TEACHING EXPERIENCES| EMPLOYMENTS AND PROFESSIONAL EXPERIENCES| RESEARCH INTERESTS| RESEARCH PROJECTS| SUPERVISED PhD THESES| SUPERVISED MSc THESES| BOOK CHAPTERS| JOURNAL PUBLICATIONS| CONFERENCE PUBLICATIONS| SUPERVISED BSc THESES]
Biography
Mousa Shamsi was born in Tabriz, Iran, in 1972. He graduated from high school (major: Mathematics-Physics) in Tabriz, in 1990. He passed the university entrance examination for engineering studies in Iran with a rank of 230 (out of 500,000 participants) in 1990, and joined Tabriz University. He received his B.Sc. degree in Electrical Engineering (major: electronic) from Tabriz University, in 1995. In 1996, he joined the University of Tehran, Tehran, IRAN. He received his M.Sc. degree in Electrical Engineering (major: Biomedical Engineering) from this university in 1999. From 1999 to 2002, he taught as a lecturer at the Sahand University of Technology, Tabriz, Iran. In 2002, he passed the doctoral course entrance examinations [in the field of Electrical Engineering], held by Ministry of Culture and Higher Education [MCHE] of Iran, and entered the University of Tehran as a PhD Candidate. From 2002 to 2008, he was a PhD student at the University of Tehran in Bioelectrical Engineering. In 2006, he was granted with the Iranian government scholarship as a visiting researcher at the Ryukyus University, Okinawa, Japan. From December 2006 to May 2008, he was a visiting researcher at this University. He received his PhD degree in Electrical Engineering (major: Biomedical Engineering) from University of Tehran in December 2008. From December 2008 to April 2013, he was an assistant professor at Faculty of Electrical Engineering, Sahand University of Technology, Tabriz, Iran. From April 2013 to June 2019, he was an associate professor at Faculty of Biomedical Engineering, Sahand University of Technology, Tabriz, Iran. From July 2019, he is a professor at this University.
Educational Background
2002-2008 University of Tehran, Tehran, Iran
Ph.D. in Bioelectrical Engineering
Ph.D. Thesis: Image Based Analysis of Human Facial Organs for Facial Reconstructive Surgical Planning
Supervisor: Dr. Reza A. Zoroofi
Co-Advisor: Prof. Caro Lucas
1996-1999 University of Tehran, Tehran, Iran
M.Sc. in Bioelectrical Engineering
Supervisor: Prof. H. SoltanianZadeh
M.Sc. Thesis: MS (Multiple Sclerosis) Lesions Segmentation from Brain MR Images
1991-1996 Tabriz University
B.Sc. in Electronics
Supervisor: Dr. H. Balazadeh Bahar
B.Sc. Thesis: Heat control systems and Microprocessors
Outstanding Achievements
Ranked 1st in B.Sc. in 1995
Ranked 39 out of 10,000 students in M.Sc. Entrance Exam of Iran in 1996
Ranked 1st in presentation of Paper [1] in 1998
Granted with the Iranian government scholarship as a visiting researcher at the University of the Ryukyus, Okinawa, Japan, 2006-2008.
Top Researcher, Faculty of Biomedical Engineering, Sahand University of Technology, 2019.
Top Researcher, Faculty of Biomedical Engineering, Sahand University of Technology, 2022.
Teaching experiences
Undergraduate Courses:
Electronics I
Biostatistics
Medical Physics
Introduction to Biomedical Engineering
Ultrasound
Introduction to Medical Imaging
Signals and Systems
Computational Intelligence
Laboratories
Graduate Courses:
Digital Signal Processing (DSP)
Random Processes
Genomic Signal Processing (GSP)
Magnetic Resonance Imaging (MRI) Systems
Advanced Digital Signal Processing (ADSP)
Digital Image Processing (DIP)
Functional Brain Imaging Systems
Medical Imaging Systems
Statistical Pattern Recognition
Employments and professional experiences
1999-2002 Lecturer, Faculty of Electrical Engineering, Sahand University of Technology, Tabriz, Iran
2008-2013 Assistant professor, Faculty of Electrical Engineering, Sahand University of Technology, Tabriz, Iran
Apr. 2013-June 2019 Associate professor, Faculty of Biomedical Engineering, Sahand University of Technology, Tabriz, Iran
July 2019-now professor, Faculty of Biomedical Engineering, Sahand University of Technology, Tabriz, Iran
Research interests
Medical Imaging,
Biomedical Image and Signal Processing,
Image Based Facial Surgery Analysis,
Genomic Signal Processing
Research Projects
1. M. Shamsi, M. H. Sedaaghi, H. Ebrahimnezhad, "Design of a Semi Automatic Method for MS (Multiple Sclerosis) Lesions Segmentation", Sahand University of Technology, 2000-2001. (In Farsi)
2. M. Shamsi, M. R. Asharif, R. A. Zoroofi, C. Lucas, M. Sadeghi hasanabadi, H. Kuang, and H. Sunakawa, " Design and implementation of an image acquisition system based on stereo vision for surgical planning", Bulletin, Faculty of Engineering, University of the Ryukyus, No. 68 , 2008.
3. M. Shamsi and S. Daneshvar, “Design and implementation of an orthogonal image acquisition system for facial surgical planning,” Sahand University of Technology, 2011. (In Farsi)
4. S. Daneshvar and M. Shamsi, “Mathematical modeling of Cardiovascular system for pathophysiological study,” Sahand University of Technology, 2011. (In Farsi)
Supervised PhD Thesis (In Farsi)
1. A. Alipour, "Anthropometric Analysis of Cerebral Ventricles Based on Brain MRI Images Acquired in Different Times using Machine Learning Algorithms," Supervisors: M. Shamsi, M.H. Sedaaghi, Faculty of Biomedical Eng., Sahand University of Technology, 2023-now.
2. M. Bashiri, "Segmentation of Brain MRI Images for Monitoring and Reporting the Progress of Brain Diseases using Machine Learning," Supervisor: M. Shamsi, Faculty of Biomedical Eng., Sahand University of Technology, 2023-now.
3. N. Mostaghim, "Identification of cervical cancer biomarkers by processing microarray data based on unsupervised learning methods," Supervisor: M. Shamsi, Faculty of Biomedical Eng., Sahand University of Technology, 2021-now.
4. A. Fahmi, "Cephalometry analysis of soft tissue in facial plastic surgeries based on orthogonal facial color images," Supervisor: M. Shamsi, Faculty of Biomedical Eng., Sahand University of Technology, 2021-May 2023.
5. A. Eidi, "Design of a micro-biosensor based on mechanical resonance configuration for aqua-environment by lab-on-a-chip applications," Supervisor(s): M. Shamsi, H. Badri, Faculty of Biomedical Eng., Sahand University of Technology, 2020- January 2022.
6. Z. Bounik, "Soft-tissue modelling for surgical simulators in the data-driven approaches," Supervisor(s): M. Shamsi, M. H. Sedaaghi, Faculty of Biomedical Eng.., Sahand University of Technology, 2016-2020.
7. F. Golabi, “Prediction of gene regulatory regions using signal processing," Supervisor(s): M. Shamsi, M. H. Sedaaghi, Faculty of Biomedical Eng., Sahand University of Technology, 2012-2019.
8. T. Akbarpour, "Brain lesion segmentation and extraction via multimodal MR fusion and machine learning algorithms," Supervisor: M. Shamsi, Faculty of Biomedical Eng., Sahand University of Technology, 2014-2019.
9. M. J. Amoshahy, "Segmentation of human brain MRI images using improved particle swarm optimization based methods," Supervisor(s): M. Shamsi, M. H. Sedaaghi, Faculty of Biomedical Eng., Sahand University of Technology, 2014-2018.
10. SH. Khoshnoud, "Functional analysis of brain in children with Attention-Deficit/Hyperactivity Disorder and Classification of Disorder via extraction of the features in EEG signal," Supervisor(s): M. Shamsi, M. A. Nazari, Faculty of Biomedical Eng., Sahand University of Technology, 2013-2017.
11. H. Saberkari, "Classification of Expression Data of Cancer Associated Genes Using Microarray Images Processing," Supervisor(s): H. Badri, M. Shamsi, Dept. of Electrical Eng., Sahand University of Technology, 2015-2017.
12. M. Farhid, “Design of adaptive networks based on distributed processing," Supervisor: M. H. Sedaaghi, Advisor: M. Shamsi, Dept. of Electrical Eng., Sahand University of Technology, 2010-2017.
Supervised M.Sc. Thesis (In Farsi)
44. M. Niazi, “," Supervisor: M. Shamsi, Faculty of Biomedical Engineering, Sahand University of Technology, 2019-2020.
43. S. Hoseinpour, “," Supervisor: M. Shamsi, Faculty of Biomedical Engineering, Sahand University of Technology, 2019-2020.
42. M. Dehnavi, “," Supervisor: M. Shamsi, Faculty of Biomedical Engineering, Sahand University of Technology, 2018-2019.
41. S. Dolati, “," Supervisor: M. Shamsi, Faculty of Biomedical Engineering, Sahand University of Technology, 2018-2019.
40. M. Delgarmi, “Automatic detection of surface landmarks of anatomical structures of back," Supervisor(s): M. Shamsi, A. Ebrahimi, Faculty of Biomedical Engineering, Sahand University of Technology, 2017-2019.
39. M. Keshizadeh, “," Supervisor: M. Shamsi, Faculty of Biomedical Engineering, Sahand University of Technology, 2017-2019.
38. K. Esmaili, “Segmentation and bias field correction of brain MR image based on gaussian mixture model methods," Supervisor: M. Shamsi, Faculty of Biomedical Engineering, Sahand University of Technology, 2017-2019.
37. A. Rahimi, “," Supervisor: M. Shamsi, Faculty of Biomedical Engineering, Sahand University of Technology, 2017-2020.
36. A. Azadpour, “Brain MR images segmentation using bacterial foraging particle swarm optimization (BFPSO) algorithm," Supervisor(s): M. Shamsi, A. Abbasi, Faculty of Biomedical Engineering, Sahand University of Technology, 2016-2018.
35. A. Eidi, “," Supervisor(s): M. Shamsi, H. Badri, Faculty of Biomedical Engineering, Sahand University of Technology, 2017-2018.
34. M. Gandomi, “Protein coding region detection in DNA sequences using wavelet transform," Supervisor(s): M. Shamsi, A. Abbasi, Faculty of Biomedical Engineering, Sahand University of Technology, 2016-2017.
33. M. Mahmoudi, “Classification of EEG signals during motor imagery tasks for brain-computer interface applications," Supervisor: M. Shamsi, Faculty of Biomedical Engineering, Sahand University of Technology, 2016-2017.
32. M. Masoumi, “," Supervisor: M. Shamsi, Faculty of Biomedical Engineering, Sahand University of Technology, 2016-2017.
31. S. Maghsadhagh, “Brain graph based analysis of fMRI data," Supervisor: M. Shamsi, Faculty of Biomedical Engineering, Sahand University of Technology, 2016-2017.
30. A. Fahmi, “Facial biometric measurement applicable for facial surgery analysis," Supervisor: M. Shamsi, Faculty of Biomedical Engineering, Sahand University of Technology, 2016-2017.
29. F. Sharifi, “Brain MR images segmentation using dictionary learning," Supervisor: M. Shamsi, Faculty of Biomedical Engineering, Sahand University of Technology, 2016-2017.
28. M. Feizollahi, “Parameter optimization of fuzzy c-means clustering algorithm using PSO for brain MR image segmentation," Supervisor(s): M. Shamsi, A. Abbasi, Dept. of Electrical Eng., Sahand University of Technology, 2015-2016.
27. G. Azizi, “Segmentation and bias field correction of brain MR images using fuzzy Gaussian mixture model," Supervisor(s): M. Shamsi, A. Abbasi, Dept. of Electrical Eng., Sahand University of Technology, 2015-2016.
26. A. R. Heidarpour, “Classification of attention deficit / hyperactivity disorder (ADHD) based on nonlinear features of brain EEG signal in children," Supervisor: M. Shamsi, Dept. of Electrical Eng., Sahand University of Technology, 2015-2016.
25. SH. Bahrami, “Classification of fMRI data using machine learning algorithms," Supervisor: M. Shamsi, Dept. of Electrical Eng., Sahand University of Technology, 2015-2016.
24. S. Kalantari, “Development of an intelligent algorithm to detect driver sleepiness," Supervisor(s): M. Shamsi, M. H. Sedaaghi, Dept. of Electrical Eng., Sahand University of Technology, 2014-2016.
23. S. A. Masoumi, “Segmentation and extraction of Multiple Sclerosis (MS) lesions from brain MR images using Ant Colony Optimization (ACO) algorithm," Supervisor(s): M. Shamsi, Dept. of Electrical Eng., Sahand University of Technology, 2014-2015.
22. A. Kordestani, “Segmentation of human brain MR images using Bacterial Foraging Optimization (BFO) algorithm," Supervisor(s): M. Shamsi, Dept. of Electrical Eng., Sahand University of Technology, 2014-2015.
21. A. Torabpour, “Development of an orthogonal stereo imaging system (film and photo) for facial surgical planning," Supervisor(s): M. Shamsi, Dept. of Electrical Eng., Sahand University of Technology, 2013-2016.
20. R. Aghaiefard, “Automatic extraction of facial features from RGB-D images for facial surgical planning," Supervisor(s): M. Shamsi, A. Ebrahimi, Dept. of Electrical Eng., Sahand University of Technology, 2013-2014.
19. E. Alaee, “Automatic extraction of face features based on orthogonal color images for analysis of face surgery," Supervisor(s): M. Shamsi, M. H. Sedaaghi, Dept. of Electrical Eng., Sahand University of Technology, 2013-2014.
18. M. Fadaee, “Medical image denoising using optimal algorithms," Supervisor(s): M. Shamsi, M. H. Sedaaghi, Dept. of Electrical Eng., Sahand University of Technology, 2013-2014.
17. H. Jahanshahloo, “EEG-based analysis of ADHD disease in children," Supervisor(s): M. Shamsi, A. Abbasi,, Dept. of Electrical Eng., Sahand University of Technology, 2013-2014.
16. A. Farrokhinia, “Segmentation and bias field correction of brain MR images," Supervisor(s): M. Shamsi, Dept. of Electrical Eng., Sahand University of Technology, 2013-2014.
15. N. M. Bakhshayesh, “Genomic data analysis using hidden Markov models," Supervisor(s): M. Shamsi, M. H. Sedaaghi, Dept. of Electrical Eng., Sahand University of Technology, 2012-2013.
14. A. Pourbakhtiar, “Graph theoretical analysis of EEG functional connectivity in response to mental and cognitive tasks," Supervisor(s): M. Shamsi, Advisor(s): G. Hoseinzadeh, Dept. of Electrical Eng., Sahand University of Technology, 2012-2013.
13. A. Momennezhad, “Classification of VEP-based EEG signals using machine learning algorithms," Supervisor(s): M. Shamsi, H. Ebrahimnezhad, Dept. of Electrical Eng., Sahand University of Technology, 2012-2013.
12. M. Joroughi, “Classification of DNA microarray data using Neural Networks," Supervisor(s): M. Shamsi, M. H. Sedaaghi, Dept. of Electrical Eng., Sahand University of Technology, 2012-2013.
11. H. Nosrati, “Distributed adaptive analysis of Gaussian space-time sources in wireless sensor networks," Supervisor(s): M. Shamsi, M. H. Sedaaghi, Dept. of Electrical Eng., Sahand University of Technology, 2012-2013.
10. H. Saberkari, “Identification of protein coding regions in DNA sequences using signal processing algorithms,” Supervisor(s): M. Shamsi, M. H. Sedaaghi, Dept. of Electrical Eng., Sahand University of Technology, 2012-2013.
9. A. AlipourAsl, “Development of calibration techniques to increase accuracy of the ADCs…,” Supervisor(s): E. NajafiAghdam, Advisor(s): M. Shamsi, Dept. of Electrical Eng., Sahand University of Technology, 2011-2012.
8. M. Ghaseri, “Face retrieval using semantic descriptors,” Supervisor(s): H. Ebrahimnezhad, Advisor(s): M. Shamsi, Dept. of Electrical Eng., Sahand University of Technology, 2011-2012.
7. A. Gholipour, “Accent classification in Persian language,” Supervisor(s): M. H. Sedaaghi, Advisor(s): M. Shamsi, Dept. of Electrical Eng., Sahand University of Technology, 2011-2012.
6. A. Biniaz, “Segmentation of human brain MR images using intelligent algorithms,” Supervisor(s): A. Abbasi, M. Shamsi, Dept. of Electrical Eng., Sahand University of Technology, 2011-2012.
5. A. Golzarfar, “Design and implementation of an orthogonal stereo imaging system for facial surgery analysis,” Supervisor(s): M. Shamsi, A. Abbasi, Dept. of Electrical Eng., Sahand University of Technology, 2011-2012.
4. M. A. Bakhshali, “Facial image segmentation and facial surgical planning,” Supervisor(s): M. Shamsi, Dept. of Electrical Eng., Sahand University of Technology, 2011-2012.
3. S. Soltanpour, “Object Categorizing in natural images by extracting its parts and using grammar between them,” Supervisor(s): H. Ebrahimnezhad, Advisor(s): M. Shamsi, Dept. of Electrical Eng., Sahand University of Technology, 2010-2011.
2. H. Mirzaei, “Automatic facial feature extraction and facial surgery analyzing,” Supervisor(s): M. Shamsi, M. H. Sedaaghi, Dept. of Electrical Eng., Sahand University of Technology, 2010-2011.
1. G. Moradi, “Defect detection in fruits using image processing algorithms,” Supervisor(s): M. Shamsi, M. H. Sedaaghi, Dept. of Electrical Eng., Sahand University of Technology, 2010-2011.
Book Chapters
1. H. Nosrati, S. M. Taheri, M. Shamsi, and M. H. Sedaaghi , “Distributed adaptive parametric power spectral estimation using wireless sensor networks," Technological Breakthroughs in Modern Wireless Sensor Applications, IGI Global, Chapter 13, 2015.
Journal Publications
75. A. Fahmi and M. Shamsi,“Measurement of Facial Golden Criteria using Cascade Regression Model for Facial Beauty Analysis,” Computational Intelligence in Electrical Engineering, Accepted.
74. A. Fahmi, M. Shamsi, S. Rahavi, and A. Amali, “ Angular Photogrammetric Analysis of Facial Soft Tissue by Image Processing Algorithms,” Aesthetic Plastic Surgery, Published online.
73. A. Fahmi and M. Shamsi,“ An Effective Hybrid Hawk Optimization for Facial Skin Segmentation under Varying Illumination,” Computational Sciences and Engineering, In Press.
72. N. Mostaghim, M. Shamsi, and F. Golabi “Microarray Images Contrast Enhancement and Gridding Using Genetic Algorithm,” Journal of Medical Signals and Sensors, vol. 14, no. 2, pp. 1-9, February 2024.
71. N. Mostaghim, M. Shamsi, and F. Golabi “Gene Expression Extraction in Cervical Cancer by Segmentation of Microarray Images Using a Novel Fuzzy Method,” Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, vol. 12, no. 1, pp. 1-11, 2024.
70. A. Fahmi and M. Shamsi,“Quantitative analysis of facial soft tissue using weighted cascade regression model applicable for facial plastic surgery,” Signal Processing: Image Communication, vol.121, pp. 117086, February 2024.
69. S.H. Esfahani, M. Shamsi, A. Fahmi, and A. Alipour, “Morphological analysis of cerebral ventricles using MRI images with fuzzy clustering optimized by Harris-Hawk Optimization (HHO) and Aggregate Chanel Features (ACF)," Applied and Basic Machine Intelligence Research, vol. 1, no. 2, pp. 131-144, Autumn 2023.
68. P. Ghaderian, F. Moghaddam, and M. Shamsi, “Diagnosis of Attention Deficit/Hyperactivity Disorder using the Analysis of Different Brain Regions Connectivity and Dynamic Time Warping Method,” Tabriz Journal of Electrical Engineering, vol. 53, no. 3, pp. 223-233, Autumn 2023.
67. A. Eidi, M. Shamsi, and H. Badri Ghavifekr, “Advanced Resonator Mass Sensor for Molecule Detection in Droplet,” Sensor Review, vol. 43, no. 4, pp. 243-248, 2023.
66. A. Fahmi and M. Shamsi,“Cephalometry Analysis of Facial Soft Tissue Based on Two Orthogonal Views Applicable for Facial Plastic Surgeries,” Multimedia Tools and Applications, vol. 82, no. 20, pp. 30643-30668, Augest 2023.
65. M. Delgarmi, H. Heravi , A. Rahimpour, M. Darabi, A. Ebrahimi, and M. Shamsi, "Automatic Landmark Detection of Human Back Surface from Depth Images via Deep Learning," World Journal of Clinical and Medical Images, vol. 1, no. 1, pp. 30-42, 2022.
64. P. Ghaderian, F. Moghaddam, SH. Khoshnoud, and M. Shamsi, “New Interdependence Feature of EEG Signals as a Biomarker of Timing Deficits Evaluated in Attention-Deficit/Hyperactivity Disorder Detection,” Measurement, vol. 199, 111468, August 2022.
63. A. Eidi, M. Shamsi, and H. Badri Ghavifekr, “Design and Evaluation of a Micro Resonator Structure as a Biosensor for Droplet analysis with a standard fabrication method,” Sensor Review, vol. 42, no. 2, pp. 263-273, March 2022.
62. A. Fahmi and M. Shamsi,“Facial Skin Segmentation Based on Color Images using Combined Approach of Self Organizing Map and Neural Gas Network Applicable to Facial Plastic Surgeries,” Journal of Advanced Signal Processing (JASP), vol. 4, no. 2, pp. 213-224, 2021. (In Farsi)
61. A. Fahmi and M. Shamsi,“Segmentation of facial Color images based on fuzzy clustering optimized by grey wolf and whale algorithms,” Journal of Soft Computing and Information Technology (JSCIP), vol. 10, no. 2, pp. 1-13, Summer 2021. (In Farsi)
60. F. Golabi, E. Mehdizadeh Aghdam, M. shamsi, M. H. Sedaaghi, A. Barzegar, and M. S. Hejazi, “Classification of seed members of five riboswitch families as short sequences based on the features extraction by Block Location Based Feature Extraction (BLBFE) method," Bioimpacts, vol. 11, no. 2, pp. 101-109, March 2021.
59. Z. Bounik, M. Shamsi, and M. H. Sedaaghi, “Real-time interactive high resolution soft tissue modeling in a data-driven enrichment approach,”Journal of Nonlinear Systems in Electrical Engineering, vol. 7, no. 1, pp. 149-162, Summer 2020. (In Farsi)
58. A. Fahmi, M. Shamsi, and H. Rouhi,“Anthropometric analysis of face using local gaussian distribution fitting applicable for facial surgery,” Signal and Data Processing, vol. 17, no. 1, pp. 61-78, June 2020. (In Farsi)
57. M. Rezaeezadeh, S. Shamekhi, and M. Shamsi, "Attention Defcit Hyperactivity Disorder diagnosis using non-linear univariate and multivariate EEG measurements: a preliminary study," Physical and Engineering Sciences in Medicine, vol. 43, no. 2, pp. 577-592, June 2020.
56. A. Fahmi and M. Shamsi, "Estimation of ear parameters applicable to otoplasty surgery," Journal of Soft Computing and Information Technology(JSCIP), vol. 9, no. 1, pp. 36-45, Spring 2020.
55. Z. Bounik, M. Shamsi, and M. H. Sedaaghi, “Accurate coarse soft tissue modeling using FEM-based fine simulation,” Multimedia Tools and Applications, vol. 79, no. 11-12, pp. 7121-7134, March 2020.
54. F. Golabi, M. shamsi, M. H. Sedaaghi, A. Barzegar, and M. S. Hejazi, “Development of a new oligonucleotide Block Location Based Feature Extraction (BLBFE) method for classification of riboswitches,” Molecular Genetics and Genomics, vol. 295, no. 2, pp. 525-534, March 2020.
53. A. Eidi, M. Shamsi, and H. Badri Ghavifekr, “Design and Simulation of a Fluidic Micro-Bio-Sensor Based on Resonator Array,” Journal of Nonlinear Systems in Electrical Engineering, vol. 6, no. 2, pp. 4-15, january 2020. (In Farsi)
52. T. Akbarpour, M. Shamsi, S. Daneshvar, and M. Pooreisa,“Fusion of multimodal medical images using nonsubsampled shearlet transform and particle swarm optimization,” Multidimensional Systems and Signal Processing, vol. 31, pp. 269-287, January 2020.
51. F. Golabi, M. shamsi, M. H. Sedaaghi, A. Barzegar, and M. S. Hejazi, “Classification of riboswitch families using Block Location Based Feature Extraction (BLBFE) method,” Advanced Pharmaceutical Bulletin, vol. 10, no. 1, pp. 97-105, January 2020.
50. A. Eidi, H. Badri Ghavifekr, and M. Shamsi,“A novel biosensor based on micromechanical resonator array for lab-on-a-chip applications,” Sensing and Imaging, an International Journal, vol. 20 , no. 1, pp. 1-10, December 2019.
49. N. Mostaghim, M. Shamsi, M. H. Sedaaghi, and H. Ebrahimnezhad “Alignment of Noncoding Ribonucleic Acids with Pseudoknots Using Context-Sensitive Hidden Markov Model,” Journal of Medical Signals and Sensors, vol. 9, no. 4, pp. 252-258, October-December 2019.
48. M. J. Amoshahy, M. Shamsi, and M. H. Sedaaghi, “An Improved Particle Swarm Optimizer Based on a Novel Class of Fast and Efficient Learning Factors Strategies,” Journal of Nonlinear Systems in Electrical Engineering, vol. 6, no. 1, pp. 4-33, Summer 2019. (In Farsi)
47. A. Alipour and M. Shamsi, “Evaluation of segmentation and bias field correction in MR brain images using level set and multiplicative intrinsic component optimization methods,” Journal of Advanced Signal Processing, vol. 3, no. 1, Summer 2019. (In Farsi)
46. T. Akbarpour, M. Shamsi, S. Daneshvar, and M. Pooreisa,“Medical image fusion based on nonsubsampled shearlet transform and principal component averaging,”International Journal of Waveletes, Multiresolution and Information Processing, vol. 17, no. 4, July 2019.
45. F. ShirinAbkenar, A. Ghaffarpour, and M. Shamsi,“Performance Analysis of Elastic Optical Networks (EONs) Switches Under Unicast Traffic,”Iran Journal of Computer Science, vol. 2, no. 2, pp. 125-129, June 2019.
44. M. Mahmoudi and M. Shamsi, “Multi-class EEG classification of motor imagery signal by finding optimal time segments and features using SNR-based mutual information,”Australasian Physical and Engineering Science in Medicine, vol. 41, no. 4, pp. 957-972, December 2018.
43. SH. Khoshnoud, M. Shamsi, M. A. Nazari, and S. Makeig, “Different cortical source activation patterns in children with attention deficit/ hyperactivity disorder during a time reproduction task,” Journal of Clinical and experimental neuropsychology(NCEN), vol. 40, no. 7, pp. 633-649, October 2018.
42. F. Golabi, M. shamsi, M. H. Sedaaghi, A. Barzegar, and M. S. Hejazi, “Development of a new sequential block finding strategy for detection of conserved sequences in riboswitches,” BioImpacts, vol. 8, no. 1, pp. 15-24, January 2018.
41. SH. Khoshnoud, M. A. Nazari, and M. Shamsi, “Functional brain dynamic analysis of ADHD and control children using nonlinear dynamical features of EEG signals,” Journal of Integrative neuroscience, vol. 17, no. 1, pp. 17-30, January 2018.
40. M. Farhid, M. H. Sedaaghi, and M. Shamsi, "Distributed incremental least-mean square for parameter estimation using heterogeneous adaptive networks in unreliable measurements," Journal of AI and Data Mining, vol. 5, no. 2, pp. 285-291, Summer and Autumn 2017.
39. SH. Bahrami and M. Shamsi, “ A non-parametric approach for the activation detection block design fMRI simulated data using self-organizing maps and support vector machine,” Journal of Medical Signals and Sensors, vol. 7, no. 3, pp. 153-162, July-September 2017.
38. H. Saberkari, M. Shamsi, and H. Badri, “A shape-independent algorithm for fully-automated gridding of cDNA microarray images," Computers and Electrical Engineering, vol.62, pp. 135-150, Agust 2017.
37. T. Akbarpour, M. Shamsi, S. Daneshvar, and M. Pooreisa, “Unsupervised multimodal magnetic resonance images segmentation and multiple sclerosis lesions extraction based on edge and texture features,” Applied Medical Informatics, vol. 39, no. 1-2, pp. 30-40, March-June 2017.
36. H.R. Jahanshahloo, M. Shamsi, E. Ghasemi, and A. Kouhi, "Automated and ERP-based diagnosis of attention deficit hyperactivity disorder in children," Journal of Medical Signals and Sensors, vol. 7, no. 1, pp. 26-32, Jan-March 2017.
35. H. Saberkari, M. Shamsi, and M. H. Sedaaghi, “Estimation of protein-coding regions in numerical DNA sequences using variable length window method based on 3D Z-curve," Journal of Signal and Data Processing, vol. 13, no. 4, pp. 63-78, February 2017.
34. M. Farhid, M. H. Sedaaghi, and M. Shamsi, “Distributed estimation over complex adaptive networks with noisy links,” Journal of Smart Structure and Systems, vol. 19, no. 4, pp. 383-391, January 2017.
33. M. Farhid, M. Shamsi, and M. H. Sedaaghi, “Impact of complex networks' topology in distributed adaptive estimation based on diffusion cooperation,” Tabriz Journal of Electrical Engineering, vol. 46, no. 4, pp. 207-216, January 2017. (In Farsi)
32. Z. Parvin, H. Seyedarabi, and M. Shamsi, "A new secure and sensitive image encryption scheme based on new substitution with chaotic function,” Multimedia Tools and Applications, vol. 75, pp. 10631-10648, September 2016.
31. M. J. Amoshahy, M. Shamsi, and M. H. Sedaaghi, “A novel flexible inertia weight particle swarm optimization algorithm,” Journal of PLOS ONE, vol. 11, no. 8, pp. 1-42, August 2016.
30. H. Saberkari, H. Badri, and M. Shamsi, “Performance evaluation of DNA microarray gridding algorithms for determining of human cancerous cells,” Journal of International Research in Medical and Pharmaceutical Sciences, vol. 7, no. 3, pp. 97-109, 2016.
29. M. Fadaaie, M. Shamsi, H. Saberkari, and M. H. Sedaaghi, “Computed tomography images de-noising using a novel two stage algorithm,” Journal of Medical Signals and Sensors, vol. 5, no. 4, pp. 220-229, Oct-Dec 2015.
28. H. Saberkari, SH. Bahrami, M. Shamsi, M. J. Amoshahy, H. Badri, and M. H. Sedaaghi, “Fully automated complementary DNA microarray segmentation using a novel fuzzy based algorithm,” Journal of Medical Signals and Sensors, vol. 5, no. 3, pp. 182-191, Jul-Sep 2015.
27. H. Nosrati, M. Shamsi, S. M. Taheri, and M. H. Sedaaghi, "Adaptive networks under non-stationary conditions: formulation, performance analysis and application,” IEEE Transactions on Signal Processing, vol. 63, no. 16, pp. 4300-4314, August 2015.
26. M. A. Bakhshali, M. Shamsi, and M. Sadeghi, “Evaluation of facial soft tissue parameters for north-west students in Iran,” Journal of Craniomaxillofacial Research (JCR), vol. 2, no. 1, pp. 78-82, Summer 2015.
25.A. Momennezhad, M. Shamsi, H. Ebrahimnezhad, and L. Asgharian, "The effect of using hamming window and linear predictive coding model in EEG-P300 signals classification,” International Journal of Computing, vol. 14, no. 2, pp. 97-106, 2015.
24. SH. Khoshnoud and M. Shamsi, “Epilepsy classification framework utilizing joint time-frequency signal analysis and processing,” Applied Medical Informatics, vol. 36, no. 2, pp. 1-8, June 2015.
23. H. Saberkari, H. Badri, and M. Shamsi, “Comprehensive performance study of magneto cantilevers as a candidate model for biological sensors used in Lab-On-A-Chip applications,” Journal of Medical Signals and Sensors, vol. 5, no. 2, pp. 77-87, Apr-Jun 2015.
22. M. A. Bakhshali and M. Shamsi, "Estimating facial angles using radon transform,” Turkish Journal of Electrical Engineering and Computer Science, vol. 23, no. 3, pp. 804-812, April 2015.
21. H. Saberkari, M. Shamsi, F. Golabi, M. J. Amoshahy, and M. H. Sedaaghi, “Performance study of cancer selection/classification algorithms based on microarray data,” Applied Medical Informatics, vol. 35, no. 4, pp. 1-10, Dec. 2014.
20. H. Saberkari, M. Shamsi, M. Joroughi, F. Golabi, and M. H. Sedaaghi, “Cancer classification in microarray data using a hybrid selective independent component analysis and v-support vector machine algorithms,” Journal of Medical Signals and Sensors, vol. 4 no. 4, pp. 291-299, Oct-Dec. 2014.
19. M. Farhid, M. H. Sedaaghi, and M. Shamsi, “On the effect of low-quality node observation on learning over incremental adaptive networks,” Journal of Communication Engineering, vol. 3, no. 2, pp. 95-108 , July-Dec. 2014.
18. A. Momennezhad, H. Ebrahimnezhad, M. Shamsi, and L. Asgharian, "Brain activity EEG-P300 signal categorization from LPC based estimation of signal using fisher linear discriminant analysis,” International Journal of Intelligent Computing in Medical Science & Image Processing, vol. 6, no. 1, pp. 17-26, August 2014.
17. M. Joroughi, M. Shamsi, H. Saberkari, M. H. Sedaaghi, and A. Momennezhad, "Gene selection and cancer classification based on microarray data using combined BPSO and BLDA algorithms,” Journal of Intelligent Systems in Electrical Engineering, vol. 5, no. 2, pp. 29-46, Summer 2014. (In Farsi)
16. H. Saberkari, M. Shamsi, and M. H. Sedaaghi, “A hybrid anti-notch/goertzel algorithm for gene prediction in DNA sequences,” Applied Medical Informatics, vol. 34, no. 2, pp. 13-22, June 2014.
15. A. Momennezhad, M. Shamsi, H. Ebrahimnezhad, and H. Saberkari, "Classification of EEG-P300 signals extracted from brain activities in BCI systems using ν-SVM and BLDA algorithms,” Applied Medical Informatics, vol. 34, no. 2, pp. 23-35, June 2014.
14. M. A. Bakhshali and M. Shamsi, "Segmentation of color lip images by optimal thresholding using bacterial foraging optimization (BFO),” Journal of Computational Science, vol. 5, no. 2, pp. 251-257, March 2014.
13. Af. Goshvarpour, Ak. Goshvarpour, and M. Shamsi "Modeling epileptic EEG time series by state space model and kalman filtering algorithm,” International Journal of Intelligent Systems and Applications, vol. 3, pp. 26-34, Feb. 2014.
12. A. Biniaz, A. Abbasi, and M. Shamsi, “Magnetic resonance image segmentation by modified spatial FCM based on Gaussian function,” Iranian Journal of Biomedical Engineering, vol. 7, no. 2, pp. 175-186, Summer 2013. (In Farsi)
11. H. Nosrati, M. Shamsi, M. Farhid, and M. H. Sedaaghi, "Distributed adaptive estimation strategies in wireless sensor networks,” Journal of Nonlinear Systems in Electrical Engineering, vol. 1, no. 1, pp. 62-81, Sep. 2013. (In Farsi)
10. H. Saberkari, M. Shamsi, H. Heravi, and M. H. Sedaaghi, "A fast algorithm for exonic regions prediction in DNA sequences,” Journal of Medical Signals and Sensors, vol. 3, no. 3, pp. 139-149, Jul-Sep. 2013.
9 A. Biniaz, M. Shamsi, and A. Abbasi, “A novel fast fuzzy c-means clustering technique for segmentation of human brain magnetic resonance images,” Turkish Journal of Fuzzy Systems, vol. 4, no. 1, pp. 34-47, November 2013.
8 H. Saberkari, M. Shamsi, and M. H. Sedaaghi, "A punctual algorithm for small gene prediction in DNA sequences using a time-frequency approach based on the Z-curve,” GSTF Journal of Engineering Technology, vol. 2, no. 1, May 2013.
7. H. Saberkari, M. Shamsi, H. Heravi, and M. H. Sedaaghi, "A novel fast algorithm for exon prediction in eukaryotic genes using linear predictive coding model and goertzel algorithm based on the Z-curve,” International Journal of Computer Applications, vol. 67, no. 17, pp. 25-38, April 2013.
6. Af. Goshvarpour, M. Shamsi, and Ak. Goshvarpour " Spectral and time based assessment of meditative heart rate signals,” International Journal of Image, Graphics and Signal Processing, vol. 4, pp. 1-10, April 2013.
5. M. A. Bakhshali and M. Shamsi, "Facial skin segmentation using bacterial foraging optimization algorithm,” Journal of Medical Signals and Sensors (JMSS), vol. 2, no. 4, pp. 33-45, Oct-Dec. 2012.
4. G. Moradi, M. Shamsi, M. H. Sedaaghi, and S. Moradi, “Using statistical histogram based EM algorithm for apple defect detection”, American Journal of Signal Processing, DOI: 10.5923/j.ajsp.20120202.02, p-ISSN: 2165-9354, e-ISSN: 2165-9362, vol. 2, no. 2, pp. 10-14, 2012.
3. G. Moradi, M. Shamsi, M. H. Sedaaghi, and M. R. Alsharif, “Pomegranate MR image analysis using fuzzy clustering algorithms,” International Commision of Agricultural and Biosystems Engineering (CIGR), vol. 14, no. 2, pp. 1-12, September 2012.
2. MD. Foisal Hossain, M. Shamsi, M. R. Asharif, R. A. Zoroofi, and K. Yamashita, " Automatic facial skin detection using Gaussian mixture model under varying illumination,” International Journal of Innovative Computing, Information and Control, Vol. 8, No. 2, pp. 1135-1143, February 2012.
1. M. Shamsi, R. A. Zoroofi, C. Lucas, M. Sadeghi hasanabadi, and M. R. Asharif, "Automatic facial skin segmentation based on EM algorithm under varying illumination, " IEICE Transaction on Information and System, vol. E91-D, no. 5, pp. 1543-1551, May 2008.
Conference Publications
75. SH. Khoshnoud, M. A. Nazari, and M. Shamsi, " Source-based multifractal detrend fluctuation analysis for discrimination of ADHD children in a time reproduction paradigm," The 13th International Joint Conference on Biomedical Engineering Systems and Technologies, Walletta, Malt, February 24-26, 2020.
74. M. Farhid, M. Shamsi, M. H. Sedaaghi, F. Alsharif, B. Senzio-Savino, and M.R. Alsharif, "On the effect of informed nodes on learning over complex adaptive networks," The 31st International Technical Conference on Circuits/Systems, Computers and Communications (ITC-CSCC 2016), Okinawa, Japan, July 10-13, 2016.
73. A.R. Heidarpour, M. Shamsi, F. Alsharif, B. Senzio-Savino, and M.R. Alsharif, "Classification of attention deficit/hyperactivity disorder (ADHD) by extracting non-linear features of children's EEG," The 31st International Technical Conference on Circuits/Systems, Computers and Communications (ITC-CSCC 2016), Okinawa, Japan, July 10-13, 2016.
72. B. Senzio-Savino, M.R. Alsharif, C. E. Gutierrez, C. Penaloza, K. Yamashita, F. Alsharif, M. Khosravy, and M. Shamsi, "Brain web pattern classification from virtual training environment by self-organizing maps," The 31st International Technical Conference on Circuits/Systems, Computers and Communications (ITC-CSCC 2016), Okinawa, Japan, July 10-13, 2016.
71. M. Farhid, M. Shamsi, and M. H. Sedaaghi, "On the effect of failure node over hetergeneous adaptive networks based on incremental LMS algorithm," 2nd International Conference on Electrical, Computer Science anf Information Technology, Tehran, Iran, Sep. 2015.
70. M. Farhid, M. Shamsi, and M. H. Sedaaghi, "Distributed adaptive estimation with selective cooperation over complex networks with noisy links," 2nd International Conference on Electrical, Computer Science anf Information Technology, Tehran, Iran, Aug. 2015.
69. T. Akbarpour, M. Shamsi and S. Daneshvar, “Medical image fusion using discrete wavelet transform and lifting scheme,” 22th Iranian Conference on Biomedical Engineering (ICBME2015), Tehran, Iran, November 2015.
68. SH. Khoshnoud, M. Shamsi and M.A. Nazari, “Non-linear EEG analysis in children with attention-deficit/hyperactivity disorder during the rest condition,” 22th Iranian Conference on Biomedical Engineering (ICBME2015), Tehran, Iran, November 2015.
67. T. Akbarpour, M. Shamsi, and S. Daneshvar, "Extraction of brain regions affected by Alzheimer disease via fusion of brain multispectral MR images," IKT2015, Urmia, Iran, May 26-28, 2015.
66. M. Farhid, M. Shamsi, and M. H. Sedaaghi, "Robust distributed incremental LMS for parameter estimation using heterogeneous adaptive networks," IKT2015, Urmia, Iran, May 26-28, 2015.
65. M. Shahchera, H. Seyedarabi, M. Shamsi, and M. R. Asharif, "Hand gesture recognition for sign language using combination of appearance-based features and SVMs," The 7th International Symposium on Telecommunications (IST2014), Tehran, Iran, September 9-11, 2014.
64. M. Joroughi, M. Shamsi, H. Saberkari, and M. H. Sedaaghi, " The hybrid BPSO/BLDA model for gene selection and cancer classification based on microarray data," 14th Iranian Conference on Fuzzy Systems, Sahand University of Technology, Tabriz, Iran, August 19-21, 2014.
63. H. Jahanshahloo, M. Shamsi, A. Abbasi, and A. Koohi, "Detection of ADHD disease in children based on power of ERP signals bands using SVM classifier," 14th Iranian Conference on Fuzzy Systems, Sahand University of Technology, Tabriz, Iran, August 19-21, 2014.
62. S. Khoshnoud and M. Shamsi, "Classification of epileptic and normal brain signals using LPC and machine learning algorithms," 14th Iranian Conference on Fuzzy Systems, Sahand University of Technology, Tabriz, Iran, August 19-21, 2014.
61. H. Nosrati, S. M. Taheri, M. Shamsi, and M. H. Sedaaghi, "Adaptive power spectral estimation using distributed wireless sensor networks," 9th International Symposium on Communication Systems, Networks and Digital Sign (CSNDSP), Manchester, United Kingdom, July 23-25, 2014.
60. E. Alaie, M. Shamsi, H. Ahmadi, S. Nazem, and M. H. Sedaaghi, "Automatic facial skin segmentation using possibilistic C-means algorithm for evaluation of facial surgeries," International Conference on Image Processing, Analysis and Computer Vision(ICIPACV2014), Istanbul, Turkey, June 19-20, 2014.
59. E. Alaie, M. Shamsi, H. Mirzaie, and M. H. Sedaaghi, "Automatic facial feature extraction and 3_D face construction based on orthogonal color images for facial surgery analysis," The 22nd Iranian Conference on Electrical Engineering (ICEE 2014), Shahid Beheshti University, Tehran, Iran, May 20-22, 2014.
58. T. Akbarpour, M. Shamsi, and S. Daneshvar, "Structural medical image fusion by means of dual tree complex wavelet," The 22nd Iranian Conference on Electrical Engineering (ICEE 2014), Shahid Beheshti University, Tehran, Iran, May 20-22, 2014.
57. A. Pourbakhtiar, M. Shamsi, and G. A. Hoseinzadeh, "Graph theoretical evaluation of brain functional connectivity based on EEG signals in response to mental and cognitive tasks," The 22nd Iranian Conference on Electrical Engineering (ICEE 2014), Shahid Beheshti University, Tehran, Iran, May 20-22, 2014.
56. M. Fadaie, M. Shamsi, H. Saberkari, and M. H. Sedaaghi "CT Image De-noising with Block-Matching and 3D Filttering (BM3D) Approach," The 6th Iranian Conference on E-Health and ICT Application in Medical Science, Tehran, Iran, May 15-16, 2014.
55. Morteza Shamsi and Mousa Shamsi, "Study of social and economic consequences of road traffic accidents and presenting practical strategies to decrease road accidents," 3rd National conference on Roadway, Railway and Arial Accidents, Zanjan, Iran, May 21, 2014.
54. A. Pourbakhtiar, M. Shamsi, and F. Farrokhshad, "Neuro-fuzzy classification of brain computer interface using phase based feature," 13th Iranian Fuzzy Systems Conference, Qazvin, Iran, August 27-29, 2013.
53. A. Pourbakhtiar and M. Shamsi, "A brain computer- interface analysis using EEG phase synchronization; based on surrogate data and statistical tests," The 2nd Basic and Clinical Neuroscience Congress Razi Convention Center, Tehran, Iran, December 18-20, 2013.
52. H. Saberkari, M. Shamsi, and M. H. Sedaaghi, “Identification of Exon regions in DNA sequences using a hybrid Anti-notch filter and Goertzel algorithm,” 8th Conference on Machine Vision and Image Processing (MVIP), pp. 257-262, Zanjan, Iran, September 10-12, 2013. (In Farsi)
51. H. Nosrati, M. Shamsi, and M. H. Sedaaghi, “Distributed adaptive power spectral estimation using wireless sensor networks,” 21th Iranian Conference on Electrical Engineering (ICEE2013), Mashhad, Iran, May 2013. (In Farsi)
50. H. Saberkari, M. Shamsi, M. H. Sedaaghi, and M. Joroughi “Gene selection and cancer cells classification in microarray data using υ-SVM and selective ICA,” 21th Iranian Conference on Electrical Engineering (ICEE2013), Mashhad, Iran, May 2013. (In Farsi)
49. H. Saberkari, M. Shamsi, and M. H. Sedaaghi, “Identification of protein coding regions in DNA sequences using DWT and adaptive filters,” 21th Iranian Conference on Electrical Engineering (ICEE2013), Mashhad, Iran, May 2013. (In Farsi)
48. A. Momennezhad, M. Shamsi, H. Ebrahimnezhad, and H. Saberkari “Development of an optimal algorithm to design BCI systems based on P300 evoked potential,” 11th Iranian Conference on Intelligent Systems (ICIS2013), Tehran, Iran, February 2013. (In Farsi)
47. M. Joroughi, M. Shamsi, H. Ebrahimnezhad M. H. Sedaaghi, and H. Saberkari “Gene selection and microarray data classification using correlation analysis, PSO algorithm and PNN,” 11th Iranian Conference on Intelligent Systems (ICIS2013), Tehran, Iran, February 2013. (In Farsi)
46. N. Mostaghim, M. Shamsi, H. Ebrahimnezhad and M. H. Sedaaghi, “RNA structure alignment using Hidden Markov Model,” 11th Iranian Conference on Intelligent Systems (ICIS2013), Tehran, Iran, February 2013. (In Farsi)
45. H. Saberkari, M. Shamsi, and M. H. Sedaaghi, “Promotion of an optimal algorithm for protein coding regions identification in DNA sequences using time-frequency filtering based on the Z-curve,” 11th Iranian Conference on Intelligent Systems (ICIS2013), Tehran, Iran, February 2013. (In Farsi)
44. H. Saberkari, M. Shamsi, M. H. Sedaaghi, and A. Momennezhad “Identification of genomic islands in DNA sequences using a non-DSP technique based on the Z-Curve,” 11th Iranian Conference on Intelligent Systems (ICIS2013), Tehran, Iran, February 2013. (In Farsi)
43. H. Saberkari, M. Shamsi, and M. H. Sedaaghi, “Promotion of an optimal algorithm for protein coding regions identification in DNA sequences,” 1st Iranian Conference on Pattern Recognition and Image Analysis, Birjand, Iran, March 2013. (In Farsi)
42. M. Shamsi, M. Baghalpour, and M. Javadi, “Application of fuzzy algorithms to automate detection of MS lesions,” Iran’s 3th International Conference on Industrial Automation, Tehran, Iran, January 2013. (In Farsi)
41. M. Shamsi, M. Baghalpour, and M. Javadi, “Segmentation and extraction of brain MS lesions from MR images,” 12th International Conference on Fuzzy Systems, Babolsar, Iran, October 2012. (In Farsi)
40. M. A. Bakhshali, M. Mafi, M. Shamsi and S. Daneshvar, “Simulation and evaluation of the patients ductus arteriosus (PDA) based on hemodynamic parameters,” 19th Iranian Conference on Biomedical Engineering (ICBME2012), Tehran, Iran, December 2012.
39. A. Biniaz, A. Abbasi, M. Shamsi, and A. Ebrahimi, “Fuzzy c-means clustering based on Gaussian spatial information for brain MR image segmentation,” 19th Iranian Conference on Biomedical Engineering (ICBME2012), Tehran, Iran, December 2012.
38. A. Biniaz, A. Abbasi, and M. Shamsi, “Fast fuzzy clustering algorithm for brain MR image segmentation,” 12th International Conference on Fuzzy Information and Engineering, Babolsar, Iran, October 2012.
37. M. A. Bakhshali, M. Shamsi, and A. Ebrahimi, “Facial skin segmentation using SOM neural networks for facial surgery analysis,” 1st National Conference on Electrical Engineering (IEEC2012), Isfahan, Iran, October 2012. (In Farsi)
36. M. A. Bakhshali and M. Shamsi, “Segmentation and varying illumination correction of facial images for facial surgery analysis,” 1st National Conference on Electrical Engineering (IEEC2012), Isfahan, Iran, October 2012. (In Farsi)
35. A. Biniaz, A. Abbasi, and M. Shamsi, “Comprehensive review of segmentation of brain MR images: methods, clinical applications, advantages and disadvantages,” 1st National Conference on Electrical Engineering (IEEC2012), Isfahan, Iran, October 2012. (In Farsi)
34. A. Biniaz, A. Abbasi, and M. Shamsi, “Spatial information improvement and time decreasing in FCM algorithm for brain MR image classification,” National Congress on Electrical, Computer, Information and Technology Engineering (CECIT2012), Mashad, Iran, November 2012. (In Farsi)
33. M. A. Bakhshali, M. Shamsi, “Cephalometric analysis of facial soft tissue using image processing methods,” National Congress on Electrical, Computer, Information and Technology Engineering (CECIT2012), Mashad, Iran, November 2012.
32. H. Saberkari, M. Shamsi, and M. H. Sedaaghi, “Prediction of Exons region in genes using DFT and wavelet transform with different window sizes,” National Congress on Electrical, Computer, Information and Technology Engineering (CECIT2012), Mashhad, Iran, November 2012. (In Farsi)
31. A. Gholipour, M. H. Sedaaghi, and M. Shamsi, “A Classifier Combination Approach for Farsi Accents Recognition,” 20th Iranian Conference on Electrical Engineering (ICEE2012), Tehran, Iran, May 2012. (In Farsi)
30. A. Gholipour, M. H. Sedaaghi, and M. Shamsi, “The contribution of prosody to the identification of Persian regional accents,” 2012 IEEE Symposium on Industrial Electronics and Applications (ISIEA2012), Bangdung, Indonesia, September 2012.
29. H. Saberkari, M. Shamsi, M. H. Sedaaghi, and F. Golabi, "Comparison of Different Algorithms for ECG Signal Compression Based on Transfer Coding,” 2012 IEEE Symposium on Industrial Electronics and Applications (ISIEA2012), Bangdung, Indonesia, September 2012.
28. H. Saberkari, M. Shamsi, M. H. Sedaaghi, and F. Golabi, “Prediction of protein coding regions in DNA sequences using signal processing methods,” 2012 IEEE Symposium on Industrial Electronics and Applications (ISIEA2012), Bangdung, Indonesia, September 2012.
27. M. A. Bakhshali, M. Shamsi, and A. Golzarfar, "Facial Skin Segmentation with Varying Illumination Correction for Evaluation of Facial Surgery Systems,” 2012 IEEE Symposium on Industrial Electronics and Applications (ISIEA2012), Bangdung, Indonesia, September 2012.
26. M. A. Bakhshali, M. Shamsi, and A. Golzarfar, "Facial Color Image Enhancement for Aesthetic Surgery Blepharoplasty,” 2012 IEEE Symposium on Industrial Electronics and Applications (ISIEA2012), Bangdung, Indonesia, September 2012.
25. M. A. Bakhshali, M. Shamsi, and A. Golzarfar, "Application of SOM network to study Facial Skin segmentation after Facial Surgery,” 2012 IEEE Symposium on Industrial Electronics and Applications (ISIEA2012), Bangdung, Indonesia, September 2012.
24. G. Moradi, M. Shamsi, M.H. Sedaaghi, and S. Moradi, “Apple defect detection using statistical histogram based fuzzy C-means algorithm,” 7th Iranian Conference on machine Vision & Image Processing (MVIP01), Tehran, Iran, November 2011.
23. G. Moradi, M. Shamsi, M.H. Sedaaghi, and Setareh Moradi, "Apple defect detection using statistical histogram based EM algorithm,” 19th Iranian Conference on Electrical Engineering, Tehran, Iran, May 2011.
22. G. Moradi, M. Shamsi, M. H. Sedaaghi, S. Moradi, “Segmentation of pomegranate MR images using improved EM algorithm,” 7th Iranian Conference on machine Vision & Image Processing (MVIP01), Nov. 2011. (In Farsi)
21. G. Moradi, M. Shamsi, M. H. Sedaaghi, M. R. Alsharif, “MR image based analysis of pomegranate internal structures,” The 2011 International Fuzzy Conference, Zahedan, Iran, July 2011. (In Farsi)
20. M. Honarparvar, E. Najafi Aghdam, M. Shamsi, A. Zahedi and M. Zafaranchi, "A low power, high performance multi-mode delta-sigma ADC for GSM, WCDMA and WLAN standards,” The 2011 International Conference on Electronic Devices, Systems and Applications (ICEDSA2011), Kualalumpur, Malaysia, April 2011.
19. G. Moradi, M. Shamsi, M. H. Sedaaghi, and M. R. Asharif, "Fruit defect detection from color images using ACM and MFCM algorithms,” The 2011 International Conference on Electronic Devices, Systems and Applications (ICEDSA2011), Computer Conference, Kualalumpur, Malaysia, April 2011.
18. H. Seyedarabi, H. Shamsi, E. Borzabadi, and M. Shamsi, "A modified fuzzy c-means clustering with spatial information for image segmentation," 2011 IACSIT Conference, Dubai, United of Emirates, March 2011.
17. G. Moradi, M. Shamsi, M. H. Sedaaghi, and M. R. Asharif, "Segmentation of pomegranate MR images using spatial fuzzy c-means (SFCM) algorithm," 2010 International Conference on Graphics and Image Processing (ICGIP2010), Manila, Philippines, December 2010.
16. G. Moradi, M. Shamsi, M. H. Sedaaghi, and M. R. Asharif, "Pomegranate MR images analysis using ACM and FCM algorithms," 2010 International Conference on Graphics and Image Processing (ICGIP2010), Manila, Philippines, December 2010.
15. M. Shamsi, R. A. Zoroofi, C. Lucas, M. Sadeghi hasanabadi and M. R. Asharif, "3D face modeling and measurements of facial parameters for surgical planning," The 8th APIS conference, University of the Ryukyus, Okinawa, Japan, January 2009.
14. M. Shamsi, R. A. Zoroofi, C. Lucas, M. Sadeghi hasanabadi and M. R. Asharif, "3D nasolabial area measurements for analyzing facial surgery," 2nd Iranian Imaging Informatics Conference, Tehran, Iran, October 2008.
13. M. Shamsi, R. A. Zoroofi, C. Lucas, M. Sadeghi hasanabadi, M. R. Asharif, H. Kuang, and H. Sunakawa, "Automatic facial feature extraction and 3D face modeling using calibrated images for surgical analyzing," CARS2008 Conference, Barcelona, Spain, June 2008.
12. M. Shamsi, R. A. Zoroofi, C. Lucas, M. Sadeghi hasanabadi, M. R. Asharif, H. Kuang, and H. Sunakawa, "3D face modeling based on calibrated images for surgical analyzing," Medical Imaging Conference in Okinawa, Japan, January 2008.
11. M. Shamsi, R. A. Zoroofi, C. Lucas, M. Sadeghi Hasanabadi, and M. R. Asharif, "Automatic localization of facial organs for facial reconstructive surgical planning," 16th Iranian Electrical Engineering Conference, Tehran, Iran, May 2008.
10. M. Shamsi, R. A. Zoroofi, C. Lucas, M. Sadeghi Hasanabadi, and M. R. Asharif, "Provision of an Algorithm for Automatic Measurement of Facial Parameters and Quantitative Analysis of Rhinoplasty," 13th Int’l CSI Computer Conference, Kish Island, Iran, March 2008.
9. Md. Foisal Hossain, M. Shamsi, M. R. Asharif, and R. A. Zoroofi, "Automatic facial skin detection based on gaussian mixture model under varying illumination," 22nd SIP Symposium, Sendai, Japan, Nov. 2007.
8. M. Shamsi, R. A. Zoroofi, C. Lucas, M. Sadeghi Hasanabadi, and M. R. Asharif, "Automatic Facial Measurements for Surgical Analyzing," Joint Conference of Electrical and Electronics Engineers in Kyushu, Japan, September 2007.
7. M. Shamsi, R. A. Zoroofi, C. Lucas, M. Sadeghi Hasanabadi, and M. R. Asharif, "Automatic Extraction of Facial Feature Points from Orthogonal Color Images for Surgical Planning," 1st Asian Forum on Medical Imaging, Cheju Island, Korea, January 2007.
6. M. Shamsi, R. A. Zoroofi, C. Lucas, M. Sadeghi Hasanabadi, and M. R. Asharif, "Automatic facial measurements for quantitative analysis of rhinoplasty," 1st Iranian Imaging Informatics Conference, Tehran, Iran, September 2007.
5. M. Shamsi, R. A. Zoroofi, C. Lucas, and M. Sadeghi Hasanabadi, "Automatic extraction of facial feature points from orthogonal facial color images," 4th Iranian Machine Vision and Image processing Conference, Mashhad, Iran, september 2006.
4. M. Shamsi, Caro Lucas, and M. H. Sedaaghi, "Automatic Parameter Estimation of Brain MR Images,"13th Iranian conference on Electrical Engineering, Iran, Zanjan University, zanjan, Iran, 2005.
3. M. Shamsi and Caro Lucas, "Assessment of different Algorithms for MS (Multiple Sclerosis) Lesion Segmentation from Brain MR Images," 5th Iranian conference on Inteligent systems, Iran, University of Ferdosi Mashhad , Mashhad, Iran, 2003.
2. M. Shamsi and H. SoltanianZadeh, "Segmentation of MS (Multiple Sclerosis) Lesions from Brain MR Images with EM Algorithms," 9th Iranian conference on Bioelectric Eng., Iran, University of Science and Technology, Tehran, Iran, pp. 414-418,1999.
1. M. Shamsi and H. SoltanianZadeh, "Correction of Intensity Inhomogeneity in MR Images," 1st Iranian Student's Conference on Bioelectric Eng., Amirkabir University of Technology, Tehran, Iran, pp.67-74, 1998.
Supervised BSc Thesis (In Farsi)
|
|
Student Name
|
B.Sc.
|
Title of Thesis
|
Defense Date
|
University
|
|
93 |
Ramtin Hamaavar |
Bioelectrical Engineering |
|
|
SUT |
|
92 |
Hasan Razmi |
Bioelectrical Engineering |
|
|
SUT |
|
91 |
Amin Ghahramani |
Bioelectrical Engineering |
|
|
SUT |
|
90 |
Omid Esmaili |
Bioelectrical Engineering |
|
|
SUT |
|
89 |
Atefeh Zareipour |
Control Engineering |
|
|
SUT |
|
88 |
Mohamad Moshiri |
Bioelectrical Engineering |
|
|
SUT |
|
87 |
Hossein Beheshti |
Bioelectrical Engineering |
|
|
SUT |
|
86 |
Ali Aghazadeh |
Bioelectrical Engineering |
|
|
SUT |
|
85 |
Farnaz Gharadaghi |
Bioelectrical Engineering |
|
|
SUT |
|
84 |
Sakineh Aliyari |
Bioelectrical Engineering |
|
|
SUT |
|
83 |
Hamid Rashid |
Bioelectrical Engineering |
|
|
SUT |
|
82 |
Arman Heidari |
Bioelectrical Engineering |
|
|
SUT |
|
81 |
Omid Abbaszadeh |
Bioelectrical Engineering |
|
|
SUT |
|
80 |
Amin Majidzadeh |
Bioelectrical Engineering |
|
|
SUT |
|
79 |
Mahsa Hosseinkhani |
Bioelectrical Engineering |
|
|
SUT |
|
78 |
MohammadReza Baiat |
Bioelectrical Engineering |
|
|
SUT |
|
77 |
Shaian Bagheri |
Bioelectrical Engineering |
|
|
SUT |
|
76 |
Kaavous Ghordouie |
Bioelectrical Engineering |
|
|
SUT |
|
75 |
Mohamad Soltaninejad |
Control Engineering |
|
|
SUT |
|
74 |
MohammadHossein Saiadian |
Bioelectrical Engineering |
|
|
SUT |
|
73 |
Omid Aboudi |
Bioelectrical Engineering |
|
|
SUT |
|
72 |
Sahar Mihanpour |
Control Engineering |
|
|
SUT |
|
71 |
Asghar Zarei |
Bioelectrical Engineering |
|
|
SUT |
|
70 |
Ali Jaami |
Bioelectrical Engineering |
|
|
SUT |
|
69 |
Fatemeh SafarAlizadeh |
Control Engineering |
|
|
SUT |
|
68 |
Saeed Moslemkhani |
Bioelectrical Engineering |
|
|
SUT |
|
67 |
Sevil MaghsadHagh |
Bioelectrical Engineering |
|
|
SUT |
|
66 |
Saalaar Mohebalizadeh |
Control Engineering |
|
|
SUT |
|
65 |
Alieh Karimi |
Bioelectrical Engineering |
|
|
SUT |
|
64 |
Majid Ghorbani |
Control Engineering |
|
|
SUT |
|
63
|
Sanaz Delavari
|
Bioelectrical Engineering
|
Medical ultrasonic
|
Summer2014
|
SUT
|
|
62
|
Shiva Asadzadeh
|
Bioelectrical Engineering
|
Medical ultrasonic
|
Summer2014
|
SUT
|
|
61
|
Sheida Bahrami
|
Bioelectrical Engineering
|
Microarray systems and DNA structure analysis
|
Winter2013
|
SUT
|
|
60
|
Saeed Ansarian
|
Bioelectrical Engineering
|
Design and implementation of ECG analyzer systems
|
Winter2013
|
SUT
|
|
59
|
Abdolvahed Khoshnodi
|
Bioelectrical Engineering
|
Principles of high technology medical imaging systems
|
Winter2013
|
SUT
|
|
58
|
MohamadAli Homayoni
|
Bioelectrical Engineering
|
Principles of high technology medical imaging systems
|
Winter2013
|
SUT
|
|
57
|
Milad Jabbari
|
Bioelectrical Engineering
|
Quality control of medical equipments (ventilators)
|
Autumn2013
|
SUT
|
|
56
|
Mohamad Mozafarnia
|
Control Engineering
|
Medical robots
|
Autumn2013
|
SUT
|
|
55
|
Fatemeh Hasanpour
|
Bioelectrical Engineering
|
Telemedicine in surgery
|
Autumn2013
|
SUT
|
|
54
|
Leila Eslami
|
Bioelectrical Engineering
|
Telemedicine in surgery
|
Autumn2013
|
SUT
|
|
53
|
Iman Izaddoost
|
Bioelectrical Engineering
|
Modeling of respiratory system and diseases detection
|
Autumn2013
|
SUT
|
|
52
|
Moeen ShoaKazemi
|
Bioelectrical Engineering
|
Modeling of respiratory system and diseases detection
|
Summer2013
|
SUT
|
|
51
|
Afsaneh Taiebi
|
Bioelectrical Engineering
|
Human identification using DNA
|
Autumn2013
|
SUT
|
|
50
|
Alireza Asadi
|
Bioelectrical Engineering
|
Human vision and artificial eyes
|
Summer2013
|
SUT
|
|
49
|
Aboobakr Samadi
|
Bioelectrical Engineering
|
Behavioral effects of brain CSF variations
|
Summer2013
|
SUT
|
|
48
|
Yousef Farshidi
|
Bioelectrical Engineering
|
Design and implementation of the syringe pump system
|
Summer2013
|
SUT
|
|
47
|
Reza Ebrahimi
|
Bioelectrical Engineering
|
Design and implementation of the syringe pump system
|
Summer2013
|
SUT
|
|
46
|
Seyed Azad Ojaghi
|
Control Engineering
|
Effects of cell phone signals on human brain activities
|
Summer2013
|
SUT
|
|
45
|
Hossein Oladi
|
Bioelectrical Engineering
|
Functional magnetic resonance imaging
|
Summer2013
|
SUT
|
|
44
|
Mohamad Abbaszadeh
|
Bioelectrical Engineering
|
Modeling of human body movement control
|
Spring2013
|
SUT
|
|
43
|
Parivash Mahmodzadeh
|
Bioelectrical Engineering
|
Survey of medical imaging systems safety
|
Winter2012
|
SUT
|
|
42
|
Farnaz Panahi
|
Bioelectrical Engineering
|
Survey of medical imaging systems safety
|
Winter2012
|
SUT
|
|
41
|
Arefeh Yaghoubi
|
Bioelectrical Engineering
|
Quality enhancement in CT-Scan images
|
Winter2012
|
SUT
|
|
40
|
Saied Darvishi
|
Control Engineering
|
Distance measurement using ultrasonic systems
|
Autumn2012
|
SUT
|
|
39
|
Hamed Ojaroudi
|
Control Engineering
|
Distance measurement using ultrasonic systems
|
Autumn2012
|
SUT
|
|
38
|
Mohamad Golshanipour
|
Bioelectrical Engineering
|
Quality control of biomedical high tech. systems
|
Autumn2012
|
SUT
|
|
37
|
Alireza HaghaniRad
|
Bioelectrical Engineering
|
Magnetic Resonance Spectroscopy
|
Autumn2012
|
SUT
|
|
36
|
Hadi Houshmand
|
Bioelectrical Engineering
|
Study of nose sensors
|
Summer2012
|
SUT
|
|
35
|
Ehsan Rakhshankhah
|
Bioelectrical Engineering
|
Study of nose sensors
|
Autumn2012
|
SUT
|
|
34
|
Omid Abbaszadeh
|
Bioelectrical Engineering
|
Study of brain motor control
|
Winter2012
|
SUT
|
|
33
|
Hojat AhmadiShorakaie
|
Bioelectrical Engineering
|
Camera calibration using grid patterns
|
Spring2011
|
SUT
|
|
32
|
Mohamad Khazaie
|
Bioelectrical Engineering
|
Study of physics and hardware of medical ultrasonic systems
|
Summer2011
|
SUT
|
|
31
|
Mohammad KumarciOskooie
|
Bioelectrical Engineering
|
Study of electrospinning and nanofibers
|
Spring2011
|
SUT
|
|
30
|
Shahrzad Choupani
|
Bioelectrical Engineering
|
Analysis of brain MS lesions using biomedical data
|
Winter2011
|
SUT
|
|
29
|
Vesal Rasoulzadeh
|
Bioelectrical Engineering
|
Analysis of brain MS lesions using biomedical data
|
Winter2011
|
SUT
|
|
28
|
Hadi Semsarieh
|
Bioelectrical Engineering
|
Psychological analysis of the people using brain MR image processing
|
Winter2011
|
SUT
|
|
27
|
Mohamad Amin Shamsi
|
Bioelectrical Engineering
|
Adaptive control of cardiovascular system
|
Summer2011
|
SUT
|
|
26
|
Mohamad Mehdi Songhori
|
Bioelectrical Engineering
|
Study of OCT imaging systems
|
Summer2011
|
SUT
|
|
25
|
Mohsen Tariverdizad
|
Bioelectrical Engineering
|
Study of different methods of CT images reconstruction
|
Winter2011
|
SUT
|
|
24
|
Babak Amiri
|
Control Engineering
|
Insulin modeling and control
|
Summer2011
|
SUT
|
|
23
|
Hosein Fazaieli
|
Bioelectrical Engineering
|
Nervous control system and prostheses
|
Summer2010
|
SUT
|
|
22
|
Mehdi Mirsadeghi
|
Bioelectrical Engineering
|
Laser in surgery
|
Autumn2010
|
SUT
|
|
21
|
Hosein Abedini
|
Control Engineering
|
Modeling of respiratory system
|
Winter2010
|
SUT
|
|
20
|
Pouya Behmanesh
|
Bioelectrical Engineering
|
Design of a virtual hospital
|
Summer2010
|
SUT
|
|
19
|
Mani Biglari
|
Bioelectrical Engineering
|
Study of PACS hardware and software in hospitals
|
Summer2010
|
SUT
|
|
18
|
Taher Boudaghi
|
Bioelectrical Engineering
|
Design and management of the hospitals
|
Summer2010
|
SUT
|
|
17
|
Naier Mostaghim
|
Bioelectrical Engineering
|
Safety in Ultrasonic systems
|
Autumn2010
|
SUT
|
|
16
|
Leila Niknam
|
Bioelectrical Engineering
|
Safety in MRI systems
|
Summer2010
|
SUT
|
|
15
|
Tohid Bakhshi
|
Bioelectrical Engineering
|
PACS and biomedical high tech. systems management
|
Summer2010
|
SUT
|
|
14
|
Pouria Haghdoust
|
Bioelectrical Engineering
|
Study of chiropractic systems
|
Summer2010
|
SUT
|
|
13
|
Nematollah Omidian
|
Bioelectrical Engineering
|
Camera calibration for medical applications
|
Summer2009
|
SUT
|
|
12
|
Akram Elahamian
|
Bioelectrical Engineering
|
Analysis of cleft lip and palate surgery using facial color images
|
Summer2009
|
SUT
|
|
11
|
Farnaz Gholipour
|
Bioelectrical Engineering
|
Analysis of cleft lip and palate surgery using facial color images
|
Summer2009
|
SUT
|
|
10
|
Mohamad Mehdi Zarei
|
Bioelectrical Engineering
|
Biomedical lasers
|
Spring2009
|
SUT
|
|
9
|
Hadi Hashemi
|
Bioelectrical Engineering
|
Design of EPI pulse sequences in fMRI system
|
Summer2009
|
SUT
|
|
8
|
Behnam Mokhnefi
|
Bioelectrical Engineering
|
Medical imaging and its application in facial surgical planning
|
Summer2009
|
SUT
|
|
7
|
Hesam Fazlali
|
Bioelectrical Engineering
|
Medical imaging and its application in facial surgical planning
|
Summer2009
|
SUT
|
|
6
|
Jamal Esmailpour
|
Bioelectrical Engineering
|
Brain contour detection and extraction
|
Summer2001
|
SUT
|
|
5
|
Ahmad Moslem
|
Bioelectrical Engineering
|
Brain contour detection and extraction
|
Summer2001
|
SUT
|
|
4
|
Hosein HafeziHaghani
|
Bioelectrical Engineering
|
Mathematical modeling of physiological systems
|
Summer2001
|
SUT
|
|
3
|
Hashem Omrani
|
Bioelectrical Engineering
|
Study of medical image compression methods
|
Summer2001
|
SUT
|
|
2
|
Mojtaba Zare
|
Bioelectrical Engineering
|
Reconstruction of CT images
|
Summer2001
|
SUT
|
|
1
|
Reza Mahboubi
|
Bioelectrical Engineering
|
Segmentation of MR images using SOM neural networks
|
Summer2001
|
SUT
|
|
|
|
|
|
|
|